Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs115414844 | chr1:227509265 | C/A | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs115424305 | chr19:18290143 | C/T | 2.09E-12 | 170 | 15.55 | 16.6 | 1.37 | KM Plot |
| PAAD | rs115516662 | chr1:227418455 | T/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs11556184 | chr2:70485320 | C/T | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs115576012 | chr1:227476031 | G/A | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs11557685 | chr2:128522383 | C/T | 7.9E-10 | 178 | 2.2 | 12.6 | 15.62 | KM Plot |
| PAAD | rs115632182 | chr1:227510459 | G/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs115643064 | chr1:227416153 | A/G | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs115655458 | chr1:227465458 | G/A | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs115755032 | chr1:227436402 | A/G | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs115756021 | chr12:53275701 | A/G | 0 | 176 | 15.62 | 13.47 | 1.03 | KM Plot |
| PAAD | rs115766366 | chr1:227520001 | C/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs115767103 | chr1:227510306 | A/G | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs115769147 | chr1:227488343 | G/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs115823838 | chr1:227303587 | C/T | 4.74E-5 | 174 | 15.53 | 15.65 | 3.9 | KM Plot |